Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs364463 | chr3:155579017 | T/A | 9.52E-5 | 484 | 16.57 | 14.63 | 9.75 | KM Plot |
| THCA | rs367631845 | chr10:81612628 | G/T | 0 | 475 | 15.97 | 15.98 | 5.92 | KM Plot |
| THCA | rs367679214 | chr9:72052172 | T/A | 7.12E-9 | 477 | 15.5 | 17.03 | 8.87 | KM Plot |
| THCA | rs367801038 | chr17:57447599 | AT/A | 9.54E-6 | 486 | 16.2 | 15.42 | 15.17 | KM Plot |
| THCA | rs368044666 | chr7:16426660 | TA/T | 5.28E-9 | 486 | 15.13 | 17.78 | 15.3 | KM Plot |
| THCA | rs368678132 | chr1:91835882 | G/A | 8.06E-6 | 489 | 15.67 | 16.97 | 17.77 | KM Plot |
| THCA | rs369107777 | chr6:119151031 | GAAAC/G | 0.000266 | 484 | 16.23 | 14.27 | 21.77 | KM Plot |
| THCA | rs369169224 | chr15:24724382 | C/G | 8.04E-5 | 484 | 15.77 | 16.37 | 17.83 | KM Plot |
| THCA | rs369465492 | chr8:52445557 | GAA/GAAA | 0.000265 | 471 | 15.17 | 17.02 | 12.43 | KM Plot |
| THCA | rs369583645 | chr10:81626617 | T/C | 4.1E-8 | 473 | 15.67 | 17.07 | 6.03 | KM Plot |
| THCA | rs369614251 | chr3:111280712 | C/T | 3.28E-5 | 477 | 16.23 | 14.27 | 12.23 | KM Plot |
| THCA | rs369905405 | chr10:7902743 | TTTTC/T | 0.000133 | 478 | 15.13 | 16.65 | 17.77 | KM Plot |
| THCA | rs369942052 | chr8:144573077 | AAAAT/A | 1.52E-6 | 479 | 16.33 | 15.9 | 10.3 | KM Plot |
| THCA | rs370043958 | chr1:41687167 | CA/C | 3.26E-7 | 485 | 14.93 | 17.77 | 17.47 | KM Plot |
| THCA | rs370553584 | chr10:81616584 | C/T | 0 | 474 | 15.97 | 15.9 | 5.92 | KM Plot |